20009: cpu/native: fix bug in periph_timer r=MrKevinWeiss a=maribu
### Contribution description
While debugging https://github.com/RIOT-OS/RIOT/pull/18977#issuecomment-1764258356 it became obvious that the `periph_timer` in `native` is broken and issues early IRQs. This replaces the use of `setitimer` that cannot use a monotonic clock source with `timer_settime()`.
### Testing procedure
I have some non-publishable code that tests if the time an ISR fires in terms of `timer_read()` is no earlier than the time expected. This occasionally triggered with `master`, but I didn't see any of these issues anymore with this PR. I guess I should revive my PR to spice up the periph timer tests and add a polished version of this and let this run for an hour or two.
The tests ins `tests/periph/timer*` should still succeed on `native`. (They do for me in a container running `riot/riotbuild`).
### Issues/PRs references
Found while debugging https://github.com/RIOT-OS/RIOT/pull/18977#issuecomment-1764258356
20042: dist/tools/uf2: add target to also copy families.json file r=MrKevinWeiss a=MichelRottleuthner
### Contribution description
The updated UF2 pkg (#20035) stores the family ID in an external .json file. I overlooked that and flashing fails if this file is not present. This PR fixes it by also copying the json into the tool folder.
### Testing procedure
Check if the `feather-nrf52840-sense` can be flashed when the new UF2 pkg is cloned freshly.
### Issues/PRs references
Fixes a regression introduced with #20035
Co-authored-by: Marian Buschsieweke <marian.buschsieweke@posteo.net>
Co-authored-by: Michel Rottleuthner <michel.rottleuthner@haw-hamburg.de>
Also use `CLOCK_MONOTONIC` for the timeouts, not just for
`timer_read()`. This fixes mismatches between when a timeout
occurs and what is expected in the context of the values returned by
`timer_read()`.
20003: coap: create typedef for CoAP methods r=benpicco a=benpicco
20028: nanocoap: fix incorrect uses of coap_get_code() r=benpicco a=benpicco
20036: boards/nucleo-l4r5zi : add PWM configuration r=benpicco a=krzysztof-cabaj
### Contribution description
This PR adds to the Nucleo-l4r5zi PWM configuration
### Testing procedure
Flash the board using `tests/periph/pwm` program. Check if you could, for example, change LED
intensity using PWM.
### Issues/PRs references
None.
20041: pkg/littlefs2: bump to v2.8.1 r=benpicco a=bergzand
### Contribution description
Minor version number bump.
### Testing procedure
- Check if I copied the correct commit hash.
- Run the tests.
### Issues/PRs references
None
Co-authored-by: Benjamin Valentin <benjamin.valentin@ml-pa.com>
Co-authored-by: krzysztof-cabaj <kcabaj@gmail.com>
Co-authored-by: Koen Zandberg <koen@bergzand.net>
20035: Bump version of UF2 package r=MrKevinWeiss a=MichelRottleuthner
### Contribution description
Bump UF2 package version. The new version, besides many other things, also includes an improvement to search more potential mount paths, which gives better compatibility for different distros.
### Testing procedure
Test if flashing still works for boards that use UF2 (e.g., `feather-nrf52840`, `feather-nrf52840-sense`, `nrf52840-mdk-dongle`):
`BUILD_IN_DOCKER=1 BOARD=feather-nrf52840-sense make -C examples/hello-world all flash term`
With master you should get this error, during flashing: `No drive to deploy.` if you run it on a distro that mounts your device under something like `/run/media/<username>/FTHRSNSBOOT`, or other paths not supported by the old version. To me this happened on Arch.
**Note: you will still get this error if your system doesn't auto mount the device.** But now it will be found when mounted ;)
With this PR try again with the UF2 util:
`rm -rf build/pkg/UF2`
`BUILD_IN_DOCKER=1 BOARD=feather-nrf52840-sense make -C examples/hello-world all flash term`
It should use the new pkg version and flash successfully:
```
...
[INFO] uf2conv.py not found - fetching it from GitHub now
CC= CFLAGS= make -C /home/michel/devel/riot/dist/tools/uf2
[INFO] uf2conv.py successfully fetched!
...
Flashing /run/media/michel/FTHRSNSBOOT (nRF52840-Feather-Sense)
Wrote 63488 bytes to /run/media/michel/FTHRSNSBOOT/NEW.UF2
...
```
### Issues/PRs references
Fixes the mount path problem described in #20027.
Co-authored-by: Michel Rottleuthner <michel.rottleuthner@haw-hamburg.de>
20034: boards/feather-nrf52840-sense: Add bootloader info r=MichelRottleuthner a=MrKevinWeiss
### Contribution description
Add some info on how to deal with really old bootloaders on the `boards/feather-nrf52840-sense`.
### Testing procedure
Read it and maybe try the example.
Here is the script I used:
<details><summary>update-bootloader-less-than-0.4.sh</summary>
```bash
# !/bin/bash
command -v arm-none-eabi-gcc >/dev/null 2>&1 || echo "gcc-arm-none-eabi must be installed!"
FOLDER="/tmp/Adafruit_nRF52_Bootloader"
if [ ! -d "$FOLDER" ] ; then
git clone https://github.com/adafruit/Adafruit_nRF52_Bootloader.git $FOLDER
fi
cd $FOLDER
git submodule update --init
make BOARD=feather_nrf52840_sense SERIAL=/dev/ttyACM0 flash-dfu
```
stdout:
```
$ ./boards/feather-nrf52840-sense/update-bootloader.sh
Submodule 'lib/nrfx' (https://github.com/NordicSemiconductor/nrfx.git) registered for path 'lib/nrfx'
Submodule 'lib/tinyusb' (https://github.com/hathach/tinyusb.git) registered for path 'lib/tinyusb'
Submodule 'lib/uf2' (https://github.com/microsoft/uf2.git) registered for path 'lib/uf2'
Cloning into '/tmp/Adafruit_nRF52_Bootloader/lib/nrfx'...
Cloning into '/tmp/Adafruit_nRF52_Bootloader/lib/tinyusb'...
Cloning into '/tmp/Adafruit_nRF52_Bootloader/lib/uf2'...
Submodule path 'lib/nrfx': checked out '7a4c9d946cf1801771fc180acdbf7b878f270093'
Submodule path 'lib/tinyusb': checked out '9775e76910d569ec73b8dd946f3fa5fe5414acdb'
Submodule path 'lib/uf2': checked out 'adbb8c7260f938e810eb37f2287f8e1a055ff402'
--2023-11-01 10:46:24-- https://github.com/adafruit/Adafruit_nRF52_Bootloader/releases/download/0.8.0/feather_nrf52840_sense_bootloader-0.8.0_s140_6.1.1.hex
Resolving github.com (github.com)... 140.82.121.4
Connecting to github.com (github.com)|140.82.121.4|:443... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://objects.githubusercontent.com/github-production-release-asset-2e65be/118896384/52889a99-9ffe-4e97-96d8-1fa79797db83?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20231101%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20231101T094625Z&X-Amz-Expires=300&X-Amz-Signature=e0f4f85d75d802691a9cce217c1f8d2ef0d2336665c221f44168c12c0331210f&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=118896384&response-content-disposition=attachment%3B%20filename%3Dfeather_nrf52840_sense_bootloader-0.8.0_s140_6.1.1.hex&response-content-type=application%2Foctet-stream [following]
--2023-11-01 10:46:24-- https://objects.githubusercontent.com/github-production-release-asset-2e65be/118896384/52889a99-9ffe-4e97-96d8-1fa79797db83?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20231101%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20231101T094625Z&X-Amz-Expires=300&X-Amz-Signature=e0f4f85d75d802691a9cce217c1f8d2ef0d2336665c221f44168c12c0331210f&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=118896384&response-content-disposition=attachment%3B%20filename%3Dfeather_nrf52840_sense_bootloader-0.8.0_s140_6.1.1.hex&response-content-type=application%2Foctet-stream
Resolving objects.githubusercontent.com (objects.githubusercontent.com)... 185.199.109.133, 185.199.110.133, 185.199.111.133, ...
Connecting to objects.githubusercontent.com (objects.githubusercontent.com)|185.199.109.133|:443... connected.
HTTP request sent, awaiting response... 304 Not Modified
File ‘/tmp/feather_nrf52840_sense.hex/feather_nrf52840_sense_bootloader-0.8.0_s140_6.1.1.hex’ not modified on server. Omitting download.
make: Entering directory '/tmp/Adafruit_nRF52_Bootloader'
CC dfu_ble_svc.c
CC dfu_init.c
CC flash_nrf5x.c
CC main.c
CC boards.c
CC nrfx_power.c
CC nrfx_nvmc.c
CC system_nrf52840.c
CC bootloader.c
CC bootloader_settings.c
CC bootloader_util.c
CC dfu_transport_serial.c
CC dfu_transport_ble.c
CC dfu_single_bank.c
CC ble_dfu.c
CC ble_dis.c
CC pstorage_raw.c
CC app_timer.c
CC app_scheduler.c
CC app_error.c
CC app_util_platform.c
CC crc16.c
CC hci_mem_pool.c
CC hci_slip.c
CC hci_transport.c
CC nrf_assert.c
CC pinconfig.c
CC msc_uf2.c
CC usb_desc.c
CC usb.c
CC ghostfat.c
CC dcd_nrf5x.c
CC tusb_fifo.c
CC usbd.c
CC usbd_control.c
CC cdc_device.c
CC msc_device.c
CC tusb.c
AS gcc_startup_nrf52840.S
LD feather_nrf52840_sense_bootloader-0.8.0.out
Memory region Used Size Region Size %age Used
FLASH: 32776 B 38 KB 84.23%
BOOTLOADER_CONFIG: 88 B 2 KB 4.30%
MBR_PARAMS_PAGE: 0 GB 4 KB 0.00%
BOOTLOADER_SETTINGS: 4 KB 4 KB 100.00%
RAM: 20192 B 224 KB 8.80%
DBL_RESET: 0 GB 4 B 0.00%
NOINIT: 62 B 128 B 48.44%
UICR_BOOTLOADER: 4 B 4 B 100.00%
UICR_MBR_PARAM_PAGE: 4 B 4 B 100.00%
text data bss dec hex filename
32864 1744 22614 57222 df86 _build/build-feather_nrf52840_sense/feather_nrf52840_sense_bootloader-0.8.0.out
Create feather_nrf52840_sense_bootloader-0.8.0.hex
Zip created at _build/build-feather_nrf52840_sense/feather_nrf52840_sense_bootloader-0.8.0_s140_6.1.1.zip
adafruit-nrfutil --verbose dfu serial --package _build/build-feather_nrf52840_sense/feather_nrf52840_sense_bootloader-0.8.0_s140_6.1.1.zip -p /dev/ttyACM0 -b 115200 --singlebank --touch 1200
Upgrading target on /dev/ttyACM0 with DFU package /tmp/Adafruit_nRF52_Bootloader/_build/build-feather_nrf52840_sense/feather_nrf52840_sense_bootloader-0.8.0_s140_6.1.1.zip. Flow control is disabled, Single bank, Touch 1200
Touched serial port /dev/ttyACM0
Opened serial port /dev/ttyACM0
Starting DFU upgrade of type 3, SoftDevice size: 151016, bootloader size: 39000, application size: 0
Sending DFU start packet
Sending DFU init packet
Sending firmware file
########################################
########################################
########################################
########################################
########################################
########################################
########################################
########################################
########################################
############
Activating new firmware
DFU upgrade took 20.308438777923584s
Device programmed.
make: Leaving directory '/tmp/Adafruit_nRF52_Bootloader'
```
</details>
### Issues/PRs references
Co-authored-by: MrKevinWeiss <weiss.kevin604@gmail.com>
20032: boards/nucleo-l552ze: add PWM configuration r=benpicco a=krzysztof-cabaj
### Contribution description
This PR adds to the Nucleo-l552ze-q PWM configuration
### Testing procedure
Flash the board using `tests/periph/pwm` program. Check if you could, for example, change LED
intensity using PWM.
### Issues/PRs references
None.
Co-authored-by: krzysztof-cabaj <kcabaj@gmail.com>
20027: boards: add support for Adafruit Feather nRF52840 Sense r=benpicco a=MichelRottleuthner
Co-authored-by: Michel Rottleuthner <michel.rottleuthner@haw-hamburg.de>
